Cell Maps PPI Embedder

The Cell Maps PPI Embedder is part of the Cell Mapping Toolkit

Generate embeddings from Protein-Protein interaction networks using node2vec

• Free software: MIT license

• Source code: https://github.com/idekerlab/cellmaps_ppi_embedding

Contents:

• Installation
  • Stable release (option 1)
  • From sources (option 2)
• Usage
  • In a project
  • On the command line
  • Via Docker
• Inputs
• Outputs
  • Outputs
  • Logs and Metadata
• Reference
  • cellmaps_ppi_embedding package
• Developer Topics
  • Contributing
  • Development Process
  • Creating a new release
  • Expected configuration for .pypirc file
  • Integration testing
  • Versioning Scheme
• Credits
  • Contributors
• History
  • 0.4.2 (2025-04-28)
  • 0.4.1 (2025-03-19)
  • 0.4.0 (2024-12-02)
  • 0.3.1 (2024-09-06)
  • 0.3.0 (2024-08-29)
  • 0.2.0 (2024-03-12)
  • 0.1.0 (2024-02-01)

Indices and tables

• Index

• Module Index

• Search Page