Index

C

cellmaps_ppi_embedding module cellmaps_ppi_embedding.cellmaps_ppi_embeddingcmd module cellmaps_ppi_embedding.exceptions module

cellmaps_ppi_embedding.runner module CellMapsPPIEmbedder (class in cellmaps_ppi_embedding.runner) CellMapsPPIEmbeddingError

D

DIMENSIONS (cellmaps_ppi_embedding.runner.EmbeddingGenerator attribute)

E

EmbeddingGenerator (class in cellmaps_ppi_embedding.runner)

F

FakeEmbeddingGenerator (class in cellmaps_ppi_embedding.runner)

G

generate_readme() (cellmaps_ppi_embedding.runner.CellMapsPPIEmbedder method) get_apms_edgelist_file() (cellmaps_ppi_embedding.runner.CellMapsPPIEmbedder static method) get_dimensions() (cellmaps_ppi_embedding.runner.EmbeddingGenerator method)

get_next_embedding() (cellmaps_ppi_embedding.runner.EmbeddingGenerator method) (cellmaps_ppi_embedding.runner.FakeEmbeddingGenerator method) (cellmaps_ppi_embedding.runner.Node2VecEmbeddingGenerator method) get_ppi_embedding_file() (cellmaps_ppi_embedding.runner.CellMapsPPIEmbedder method)

M

main() (in module cellmaps_ppi_embedding.cellmaps_ppi_embeddingcmd) module cellmaps_ppi_embedding cellmaps_ppi_embedding.cellmaps_ppi_embeddingcmd cellmaps_ppi_embedding.exceptions cellmaps_ppi_embedding.runner

N

Node2VecEmbeddingGenerator (class in cellmaps_ppi_embedding.runner)

NUM_WALKS (cellmaps_ppi_embedding.runner.Node2VecEmbeddingGenerator attribute)

P

P_DEFAULT (cellmaps_ppi_embedding.runner.Node2VecEmbeddingGenerator attribute)

PPI_EDGELIST_FILEKEY (cellmaps_ppi_embedding.runner.CellMapsPPIEmbedder attribute)

Q

Q_DEFAULT (cellmaps_ppi_embedding.runner.Node2VecEmbeddingGenerator attribute)

R

run() (cellmaps_ppi_embedding.runner.CellMapsPPIEmbedder method)

W

WALK_LENGTH (cellmaps_ppi_embedding.runner.Node2VecEmbeddingGenerator attribute)

WORKERS (cellmaps_ppi_embedding.runner.Node2VecEmbeddingGenerator attribute)